5GPE

Crystal structure of the transcription regulator PbrR691 from Ralstonia metallidurans CH34 in complex with Lead(II)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 5GPE

Classification: TRANSCRIPTION

Total Structure Weight: 121324.66

Macromolecule Entities
Molecule Chains Length Organism Details
Transcriptional regulator, MerR-family A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 129 Cupriavidus metallidurans Fragment: UNP residues 1-129
Gene Name(s): pbrR2 Rmet_2302
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PB
Query on PB

A, B, C, D, E, F, G, H LEAD (II) ION
Pb
RVPVRDXYQKGNMQ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.177
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 62.94 α = 109.33
b = 67.90 β = 89.82
c = 89.72 γ = 90.32

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-08-01
  • Released Date: 2016-12-28
  • Deposition author(s): Huang, S.Q., Chen, W.Z., Wang, D., Hu, Q.Y., Liu, X.C., Gan, J.H., Chen, H.

Revision History

  • Version 1_0: 2016-12-28

    Type: Initial release

  • Version 1_1: 2017-08-16

    Type: Structure summary