5GKR

Crystal structure of SLE patient-derived anti-DNA antibody in complex with oligonucleotide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 5GKR

Classification: IMMUNE SYSTEM / DNA

Total Structure Weight: 93862.88


Macromolecule Entities
Molecule Chains Length Organism Details
IgG2, Fab (heavy chain) A, C 218 Homo sapiens
lambda, Fab (light chain) B, D 216 Homo sapiens
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(P*TP*TP*TP*T)-3') T 4 Homo sapiens


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.163
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 147.51 α = 90.00
b = 147.51 β = 90.00
c = 112.81 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-07-05
  • Released Date: 2017-07-05
  • Deposition author(s): Arimori, T., Sakakibara, S., Kikutani, H., Takagi, J.

Revision History

  • Version 1_0: 2017-07-05

    Type: Initial release