5G5Y

S.pneumoniae ABC-transporter substrate binding protein FusA apo structure

Structural Biology Knowledgebase: 5G5Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.161

Literature

Macromolecules
Sequence Display for 5G5Y

Classification: TRANSPORT PROTEIN

Total Structure Weight: 114072.41

Macromolecule Entities
Molecule Chains Length Organism Details
ABC TRANSPORTER, SUBSTRATE-BINDING PROTEIN A, B 494 Streptococcus pneumoniae Gene Name(s): SP_1796
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.161
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.07 α = 108.02
b = 72.17 β = 104.99
c = 77.66 γ = 92.49

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-06-10
  • Released Date: 2017-01-18
  • Deposition author(s): Culurgioni, S., Harris, G., Singh, A.K., King, S.J., Walsh, M.A.

Revision History

No revisions since initial release