5FPN

Structure of heat shock-related 70kDA protein 2 with small-molecule ligand 3,5-dimethyl-1H-pyrazole-4-carboxylic acid (AT9084) in an alternate binding site.

Structural Biology Knowledgebase: 5FPN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 5FPN

Classification: SIGNALING PROTEIN

Total Structure Weight: 141033.98

Macromolecule Entities
Molecule Chains Length Organism Details
HEAT SHOCK-RELATED 70 KDA PROTEIN 2 A, B 640 Homo sapiens Fragment: UNP RESIDUES 4-639
Gene Name(s): HSPA2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
KYD
Query on KYD

A, B 3,5-DIMETHYL-1H-PYRAZOLE-4-CARBOXYLIC ACID
C6 H8 N2 O2
IOOWDXMXZBYKLR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.174
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.82 α = 90.00
b = 94.85 β = 90.15
c = 81.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-12-02
  • Released Date: 2015-12-23
  • Deposition author(s): Jhoti, H., Ludlow, R.F., Patel, S., Saini, H.K., Tickle, I.J., Verdonk, M.

Revision History

  • 2016-01-13
    Type: Citation | Details: JRNL