5F1B

Structural basis of Ebola virus entry: viral glycoprotein bound to its endosomal receptor Niemann-Pick C1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 5F1B

Classification: VIRAL PROTEIN / TRANSPORT PROTEIN

Total Structure Weight: 61956.35

Macromolecule Entities
Molecule Chains Length Organism Details
GP1 A 158 Zaire ebolavirus Fragment: UNP RESIDUES 32-188
Mutation: T42V
Gene Name(s): GP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
GP2 B 130 Zaire ebolavirus Fragment: UNP RESIDUES 509-598
Gene Name(s): GP
Niemann-Pick C1 protein C 256 Homo sapiens Fragment: UNP RESIDUES 374-620
Gene Name(s): NPC1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.181
  • Space Group: P 63

Unit Cell:

Length (Å) Angle (°)
a = 107.26 α = 90.00
b = 107.26 β = 90.00
c = 93.78 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-11-30
  • Released Date: 2016-01-20
  • Deposition author(s): Wang, H., Shi, Y., Song, J., Qi, J., Lu, G., Yan, J., Gao, G.F.

Revision History

  • Version 1_0: 2016-01-20

    Type: Initial release

  • Version 1_1: 2016-01-27

    Type: Database references