5F0E

Murine endoplasmic reticulum alpha-glucosidase II


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.169
  • R-Value Work: 0.141

Literature

Macromolecules
Sequence Display for 5F0E

Classification: HYDROLASE

Total Structure Weight: 110107.65

Macromolecule Entities
Molecule Chains Length Organism Details
Neutral alpha-glucosidase AB A 857 Mus musculus EC#: 3.2.1.84 IUBMB
Fragment: UNP Residues 33-966
Mutation: ΔV186, ΔP187, ΔF188, ΔS189, ΔD190, ΔK191, ΔV192, ΔS193, ΔL194, ΔA195, ΔL196, ΔG197, ΔS198, ΔV199, ΔW200, ΔD201, ΔK202, ΔI203, ΔK204, ΔN205, ΔL206, ΔF207, ΔS208, ΔR209, ΔQ210, ΔE211, ΔS212, ΔK213, ΔD214, ΔP215, ΔA216, ΔE217, ΔG218, ΔN219, ΔG220, ΔA221, ΔQ222, ΔP223, ΔE224, ΔA225, ΔT226, ΔP227, ΔG228, ΔD229, ΔG230, ΔD231, ΔK232, ΔP233, ΔE234, ΔE235, ΔT236, ΔQ237, ΔE238, ΔK239, ΔA240, ΔE241, ΔK242, ΔD243, ΔT351, ΔA352, ΔG353, ΔK354, ΔT355, ΔL356, ΔF357, ΔG358, ΔK359, ΔM360, ΔL361, ΔD362, ΔY363, ΔL364, ΔQ365, ΔG366, ΔS367, ΔG368, ΔE369
Gene Name(s): Ganab G2an Kiaa0088
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Glucosidase 2 subunit beta B 88 Mus musculus Gene Name(s): Prkcsh
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P6G
Query on P6G

A HEXAETHYLENE GLYCOL
POLYETHYLENE GLYCOL PEG400 (Synonym)
C12 H26 O7
IIRDTKBZINWQAW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PG4
Query on PG4

A TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

A FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.169
  • R-Value Work: 0.141
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 104.14 α = 90.00
b = 173.77 β = 90.00
c = 62.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-11-27
  • Released Date: 2016-07-27
  • Deposition author(s): Caputo, A.T., Roversi, P., Alonzi, D.S., Kiappes, J.L., Zitzmann, N.

Revision History

  • Version 1_0: 2016-07-27

    Type: Initial release

  • Version 1_1: 2016-08-03

    Type: Database references

  • Version 1_2: 2016-08-24

    Type: Database references

  • Version 1_3: 2017-08-16

    Type: Data collection