5EVI

Crystal Structure of Beta-Lactamase/D-Alanine Carboxypeptidase from Pseudomonas syringae

Structural Biology Knowledgebase: 5EVI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 5EVI

Classification: HYDROLASE

Total Structure Weight: 163818.83

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-Lactamase/D-Alanine Carboxypeptidase A 366 Pseudomonas syringae group genomosp. 3 EC#: 3.5.2.6 IUBMB
Gene Name(s): ampC PSPTO_3594
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-Lactamase/D-Alanine Carboxypeptidase B 366 Pseudomonas syringae group genomosp. 3 EC#: 3.5.2.6 IUBMB
Gene Name(s): ampC PSPTO_3594
Beta-Lactamase/D-Alanine Carboxypeptidase C 366 Pseudomonas syringae group genomosp. 3 EC#: 3.5.2.6 IUBMB
Gene Name(s): ampC PSPTO_3594
Beta-Lactamase/D-Alanine Carboxypeptidase D 366 Pseudomonas syringae group genomosp. 3 EC#: 3.5.2.6 IUBMB
Gene Name(s): ampC PSPTO_3594

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET
MLY
Query on MLY
A, B, C, D L-PEPTIDE LINKING C8 H18 N2 O2 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.163
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 53.87 α = 89.94
b = 72.64 β = 90.01
c = 93.77 γ = 90.08

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-11-19
  • Released Date: 2016-01-13
  • Deposition author(s): Kim, Y., Hatzos-Skintges, C., Endres, M., Babnigg, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

No revisions since initial release