5EF6

Structure of HOXB13 complex with methylated DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.320
  • R-Value Work: 0.291

Literature

Macromolecules
Sequence Display for 5EF6

Classification: TRANSCRIPTION

Total Structure Weight: 74280.46


Macromolecule Entities
Molecule Chains Length Organism Details
Homeobox protein Hox-B13 A, B, G, J 62 Homo sapiens Fragment: UNP residues 217-278
Gene Name(s): HOXB13 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*GP*GP*TP*CP*C)-3') C, D, H, K 18 Synthetic construct
DNA (5'-D(P*GP*GP*AP*CP*CP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3') E, F, I, L 18 Synthetic construct

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5CM
Query on 5CM
C, D, E, F, H, I, K, L DNA LINKING C10 H16 N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.320
  • R-Value Work: 0.291
  • Space Group: P 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 77.97 α = 90.00
b = 55.56 β = 102.24
c = 102.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-10-23
  • Released Date: 2017-02-08
  • Deposition author(s): Morgunova, E., Yin, Y., Jolma, A., Popov, A., Taipale, J.

Revision History

  • Version 1_0: 2017-02-08

    Type: Initial release

  • Version 1_1: 2017-05-17

    Type: Database references