5E6D

Glucocorticoid receptor DNA binding domain - ICAM1 NF-kB response element complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.257

Literature

Macromolecules
Sequence Display for 5E6D

Classification: dna binding protein / dna

Total Structure Weight: 35577.63


Macromolecule Entities
Molecule Chains Length Organism Details
Glucocorticoid receptor A, B 114 Homo sapiens Gene Name(s): NR3C1 Gene View GRL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*CP*TP*CP*CP*GP*GP*AP*AP*TP*TP*TP*CP*CP*AP*A)-3') C 16 Homo sapiens
DNA (5'-D(*TP*TP*GP*GP*AP*AP*AP*TP*TP*CP*CP*GP*GP*AP*GP*C)-3') D 16 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.257
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 39.06 α = 90.00
b = 97.14 β = 90.00
c = 104.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-10-09
  • Released Date: 2017-02-08
  • Deposition author(s): Hudson, W.H., Rye, E.A., Herbst, A.G., Ortlund, E.A.

Revision History

  • Version 1_0: 2017-02-08

    Type: Initial release

  • Version 1_1: 2017-11-22

    Type: Refinement description