5E2H

Crystal Structure of D-alanine Carboxypeptidase AmpC from Mycobacterium smegmatis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 5E2H

Classification: HYDROLASE

Total Structure Weight: 116696.33

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-lactamase A, B, C 357 Mycobacterium smegmatis EC#: 3.5.2.6 IUBMB
Fragment: residues 27-380
Gene Name(s): MSMEG_3978
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.163
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 127.78 α = 90.00
b = 73.68 β = 90.19
c = 113.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-10-01
  • Released Date: 2015-10-14
  • Deposition author(s): Kim, Y., Hatzos-Skintges, C., Endres, M., Babnigg, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

No revisions since initial release