5DV1

The fatty acid-responsive FadR repressor of Vibrio alginolyticus

Structural Biology Knowledgebase: 5DV1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.215

Literature

Macromolecules
Sequence Display for 5DV1

Classification: TRANSCRIPTION

Total Structure Weight: 34463.79

Macromolecule Entities
Molecule Chains Length Organism Details
GntR family transcriptional regulator A 300 Vibrio alginolyticus Gene Name(s): fadR AAW52_18775
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.215
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 76.00 α = 90.00
b = 76.00 β = 90.00
c = 144.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-09-21
  • Released Date: 2016-10-05
  • Deposition author(s): Lin, Y., Li, D.F., Feng, Y.J.

Revision History

No revisions since initial release