5DE5

Crystal structure of the complex between human FMRP RGG motif and G-quadruplex RNA.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 5DE5

Classification: RNA binding protein / RNA

Total Structure Weight: 26771.21


Macromolecule Entities
Molecule Chains Length Organism Details
Fragile X mental retardation protein 1 B, D 18 Homo sapiens Mutation: R3A
Gene Name(s): FMR1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
sc1 A, C 35 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
K
Query on K

A, C POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.194
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 57.06 α = 90.00
b = 130.01 β = 90.00
c = 36.75 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-08-25
  • Released Date: 2015-09-23
  • Deposition author(s): Vasilyev, N., Polonskaia, A., Darnell, J.C., Darnell, R.B., Patel, D.J., Serganov, A.

Revision History

  • Version 1_0: 2015-09-23

    Type: Initial release

  • Version 1_1: 2015-09-30

    Type: Database references

  • Version 1_2: 2015-10-14

    Type: Database references

  • Version 1_3: 2017-09-06

    Type: Author supporting evidence, Database references, Derived calculations