5CTN

Structure of BPu1 beta-lactamase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.187
  • R-Value Work: 0.160

Literature

Macromolecules
Sequence Display for 5CTN

Classification: HYDROLASE

Total Structure Weight: 55662.45

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-lactamase A, B 233 Bacillus pumilus EC#: 3.5.2.6 IUBMB
Gene Name(s): BPUM_2340
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
5R7
Query on 5R7

A, B (2~{S},3~{R})-3-methyl-2-[(2~{S},3~{R})-3- oxidanyl-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})- 5-[(sulfamoylamino)methyl]pyrrolidin-3-yl]sulfanyl- 3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid
Doripenem(open form, pyrroline tautomer form 3, SP3 connection to Thio as R isomer) (Synonym)
C15 H26 N4 O6 S2
RBKUPZPTQNSPAV-QZOCKBNKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FLC
Query on FLC

A CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.187
  • R-Value Work: 0.160
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 47.80 α = 90.00
b = 80.00 β = 92.85
c = 64.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-07-24
  • Released Date: 2015-11-25
  • Deposition author(s): Smith, C.A., Vakulenko, S.B.

Revision History

  • 2016-10-05
    Type: Non-polymer description | Details: Non-polymer description
  • 2015-12-30
    Type: Citation | Details: Citation