5CNP

X-ray crystal structure of Spermidine n1-acetyltransferase from Vibrio cholerae.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 5CNP

Classification: TRANSFERASE

Total Structure Weight: 126891.09

Macromolecule Entities
Molecule Chains Length Organism Details
Spermidine N(1)-acetyltransferase A, B, C..., D, E, FA, B, C, D, E, F 176 Vibrio cholerae EC#: 2.3.1.57 IUBMB
Details: SNA - cloning artifacts
Gene Name(s): speG VC_A0947
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IPA
Query on IPA

A, E ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B, D, F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.185
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 159.93 α = 90.00
b = 134.18 β = 114.43
c = 77.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-07-17
  • Released Date: 2015-07-29
  • Deposition author(s): Osipiuk, J., VOLKART, L., MOY, S., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
  • This entry supercedes: 3EG7

Revision History

  • Version 1_0: 2015-07-29

    Type: Initial release

  • Version 1_1: 2015-10-07

    Type: Database references

  • Version 1_2: 2015-11-11

    Type: Database references

  • Version 1_3: 2017-09-20

    Type: Author supporting evidence, Database references, Derived calculations