5C4Y

Crystal structure of putative TetR family transcription factor from Listeria monocytogenes

Structural Biology Knowledgebase: 5C4Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.162

Literature

Macromolecules
Sequence Display for 5C4Y

Classification: TRANSCRIPTION

Total Structure Weight: 42856.10

Macromolecule Entities
Molecule Chains Length Organism Details
Putative transcription regulator Lmo0852 A, B 184 Listeria monocytogenes Gene Name(s): lmo0852
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.162
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 195.70 α = 90.00
b = 52.17 β = 104.97
c = 50.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-06-18
  • Released Date: 2015-07-08
  • Deposition author(s): Chang, C., Tesar, C., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

No revisions since initial release