5BS6

Apo structure of transcriptional factor AraR from Bacteroides thetaiotaomicron VPI


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 5BS6

Classification: TRANSCRIPTION

Total Structure Weight: 106736.80

Macromolecule Entities
Molecule Chains Length Organism Details
transcriptional regulator AraR A, B, C, D 228 Bacteroides thetaiotaomicron Gene Name(s): BT_0354
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B, C, D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.195
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 176.44 α = 90.00
b = 176.44 β = 90.00
c = 118.43 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-06-01
  • Released Date: 2015-06-17
  • Deposition author(s): Chang, C., Tesar, C., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
  • This entry supercedes: 2FB1

Revision History

  • Version 1_0: 2015-06-17

    Type: Initial release

  • Version 1_1: 2015-06-24

    Type: Other

  • Version 1_2: 2015-10-21

    Type: Database references

  • Version 1_3: 2015-12-16

    Type: Database references