5BP8

ent-Copalyl diphosphate synthase from Streptomyces platensis

Structural Biology Knowledgebase: 5BP8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.156

Literature

Macromolecules
Sequence Display for 5BP8

Classification: ISOMERASE

Total Structure Weight: 55435.61

Macromolecule Entities
Molecule Chains Length Organism Details
Ent-copalyl diphosphate synthase A 523 Streptomyces platensis Gene Name(s): ptmT2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 132.87 α = 90.00
b = 132.87 β = 90.00
c = 190.75 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-05-27
  • Released Date: 2015-06-10
  • Deposition author(s): Osipiuk, J., Hatzos-Skintges, C., Endres, M., Babnigg, G., Rudolf, J.D., Ma, M., Chang, C.-Y., Shen, B., Joachimiak, A., Enzyme Discovery for Natural Product Biosynthesis (NatPro), Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2016-09-14
    Type: Citation | Details: Citation
  • 2016-09-07
    Type: Citation | Details: Citation