Download MendeleyCrystal Structure of Metallo-beta-Lactamase SMB-1 Bound to L-captopril
Wachino, J., Arakawa, Y.To be published.
5AYA
Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to L-captopril
- PDB DOI: https://doi.org/10.2210/pdb5AYA/pdb
- Classification: HYDROLASE
- Organism(s): Serratia marcescens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2015-08-12 Released: 2016-05-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.02 Å
- R-Value Free: 0.282
- R-Value Work: 0.210
- R-Value Observed: 0.214
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Metallo-beta-lactamase | 262 | Serratia marcescens | Mutation(s): 0 Gene Names: SMB-1 EC: 3.5.2.6 |  | |
UniProt | |||||
Find proteins for G5ELM3 (Serratia marcescens) Explore G5ELM3 Go to UniProtKB: G5ELM3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | G5ELM3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| X8Z Query on X8Z | H [auth A] | L-CAPTOPRIL C9 H15 N O3 S FAKRSMQSSFJEIM-RQJHMYQMSA-N |  | ||
| SO4 Query on SO4 | F [auth A], G [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| ZN Query on ZN | B [auth A], C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| NA Query on NA | D [auth A], E [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.02 Å
- R-Value Free: 0.282
- R-Value Work: 0.210
- R-Value Observed: 0.214
- Space Group: P 31
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 68.097 | α = 90 |
| b = 68.097 | β = 90 |
| c = 49.11 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2016-05-11 Deposition Author(s): Wachino, J., Arakawa, Y.
Revision History (Full details and data files)
- Version 1.0: 2016-05-11
Type: Initial release - Version 1.1: 2020-02-26
Changes: Data collection, Derived calculations - Version 1.2: 2023-11-08
Changes: Data collection, Database references, Refinement description
