4Z42

Crystal structure of urease from Yersinia enterocolitica


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.01 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.277 
  • R-Value Observed: 0.278 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of urease from Yersinia enterocolitica

Studer, G.Jakob, R.P.Mahi, M.A.Wiesand, U.Schwede, T.Maier, T.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Urease subunit gamma
A, D, G, J
100Yersinia enterocolitica W22703Mutation(s): 0 
EC: 3.5.1.5
UniProt
Find proteins for F4MWM9 (Yersinia enterocolitica W22703)
Explore F4MWM9 
Go to UniProtKB:  F4MWM9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF4MWM9
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Urease subunit beta
B, E, H, K
164Yersinia enterocolitica W22703Mutation(s): 0 
EC: 3.5.1.5
UniProt
Find proteins for F4MWM8 (Yersinia enterocolitica W22703)
Explore F4MWM8 
Go to UniProtKB:  F4MWM8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF4MWM8
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Urease subunit alpha
C, F, I, L
572Yersinia enterocolitica W22703Mutation(s): 0 
EC: 3.5.1.5
UniProt
Find proteins for F4MWM7 (Yersinia enterocolitica W22703)
Explore F4MWM7 
Go to UniProtKB:  F4MWM7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF4MWM7
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.01 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.277 
  • R-Value Observed: 0.278 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 157.2α = 90
b = 157.2β = 90
c = 774.62γ = 120
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-04-13
    Type: Initial release
  • Version 1.1: 2018-11-21
    Changes: Advisory, Data collection, Derived calculations
  • Version 1.2: 2024-01-10
    Changes: Data collection, Database references, Refinement description