Download MendeleyStructure of the PTP-like phytase from Selenomonas ruminantium in complex with myo-inositol-(1,4,5)-trikisphosphate
Bruder, L.M.To be published.
4WU2
Structure of the PTP-like myo-inositol phosphatase from Selenomonas ruminantium in complex with myo-inositol-(1,4,5)-trikisphosphate
- PDB DOI: https://doi.org/10.2210/pdb4WU2/pdb
- Classification: HYDROLASE
- Organism(s): Selenomonas ruminantium
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2014-10-30 Released: 2015-11-04
- Funding Organization(s): Canada Foundation for Innovation, Natural Sciences and Engineering Research Council (NSERC, Canada)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.219
- R-Value Work: 0.197
- R-Value Observed: 0.198
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Myo-inositol phosphohydrolase | 342 | Selenomonas ruminantium | Mutation(s): 1 Gene Names: phyA EC: 3.1.3.8 |  | |
UniProt | |||||
Find proteins for Q7WUJ1 (Selenomonas ruminantium) Explore Q7WUJ1 Go to UniProtKB: Q7WUJ1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7WUJ1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| I3P Query on I3P | C [auth A], G [auth B] | D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE C6 H15 O15 P3 MMWCIQZXVOZEGG-XJTPDSDZSA-N |  | ||
| PO4 Query on PO4 | D [auth A], H [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| GOL Query on GOL | E [auth A], F [auth A], J [auth B], K [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CL Query on CL | I [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.219
- R-Value Work: 0.197
- R-Value Observed: 0.198
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 45.98 | α = 90 |
| b = 137.67 | β = 102.42 |
| c = 80.01 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| Aimless | data scaling |
Entry History & Funding Information
Deposition Data
- Released Date: 2015-11-04 Deposition Author(s): Bruder, L.M., Mosimann, S.C.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Canada Foundation for Innovation | Canada | -- |
| Natural Sciences and Engineering Research Council (NSERC, Canada) | Canada | -- |
Revision History (Full details and data files)
- Version 1.0: 2015-11-04
Type: Initial release - Version 1.1: 2017-09-13
Changes: Author supporting evidence, Derived calculations - Version 1.2: 2020-01-08
Changes: Author supporting evidence - Version 1.3: 2023-09-27
Changes: Data collection, Database references, Refinement description
