4V4R

Crystal structure of the whole ribosomal complex.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.9 Å
  • R-Value Free: 0.371
  • R-Value Work: 0.351

Literature

Macromolecules
Sequence Display for 4V4R

Classification: RIBOSOME

Total Structure Weight: 2277812.25


Macromolecule Entities
Molecule Chains Length Organism Details
30S ribosomal protein S2 AB 256 Thermus thermophilus Gene Name(s): rpsB rps2 TTHA0861
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S3 AC 239 Thermus thermophilus Gene Name(s): rpsC rps3 TTHA1686
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S4 AD 209 Thermus thermophilus Gene Name(s): rpsD rps4 TTHA1665
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S5 AE 162 Thermus thermophilus Gene Name(s): rpsE TTHA1675
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S6 AF 101 Thermus thermophilus Gene Name(s): rpsF rps6
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S7 AG 156 Thermus thermophilus Gene Name(s): rpsG rps7 TTHA1696
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S8 AH 138 Thermus thermophilus Gene Name(s): rpsH rps8
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S9 AI 128 Thermus thermophilus Gene Name(s): rpsI rps9 TTHA1464
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S10 AJ 105 Thermus thermophilus Gene Name(s): rpsJ rps10
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S11 AK 129 Thermus thermophilus Gene Name(s): rpsK rps11 TTHA1666
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S12 AL 135 Thermus thermophilus
30S ribosomal protein S13 AM 126 Thermus thermophilus Gene Name(s): rpsM rps13 TTHA1667
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S14 AN 61 Thermus thermophilus Gene Name(s): rpsZ rps14 rpsN
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S15 AO 89 Thermus thermophilus Gene Name(s): rpsO rps15
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S16 AP 88 Thermus thermophilus Gene Name(s): rpsP TTHA1035
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S17 AQ 105 Thermus thermophilus Gene Name(s): rpsQ rps17
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S18 AR 88 Thermus thermophilus Gene Name(s): rpsR rps18
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S19 AS 93 Thermus thermophilus Gene Name(s): rpsS rps19
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S20 AT 106 Thermus thermophilus Gene Name(s): rpsT rps20 TT_C1031
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein Thx AU 27 Thermus thermophilus Gene Name(s): rpsU
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Peptide chain release factor 1 AY 354 Thermus thermophilus Gene Name(s): prfA TTHA1940
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L2 BD 173 Thermus thermophilus
50S ribosomal protein L3 BE 338 Thermus thermophilus
50S ribosomal protein L4 BF 246 Thermus thermophilus
50S ribosomal protein L5 BG 176 Thermus thermophilus
50S ribosomal protein L6 BH 177 Thermus thermophilus
50S ribosomal protein L9 BI 149 Thermus thermophilus
50S ribosomal protein L13 BN 145 Thermus thermophilus
50S ribosomal protein L14 BO 122 Thermus thermophilus
50S ribosomal protein L15 BP 164 Thermus thermophilus
50S ribosomal protein L16 BQ 138 Thermus thermophilus
50S ribosomal protein L18 BS 186 Thermus thermophilus
50S ribosomal protein L19 BT 66 Thermus thermophilus
50S ribosomal protein L22 BW 113 Thermus thermophilus Gene Name(s): rplV TTHA1687
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L23 BX 84 Thermus thermophilus
50S ribosomal protein 24 BY 119 Thermus thermophilus
50S ribosomal protein CTC BZ 253 Thermus thermophilus
50S ribosomal protein L17 BR 118 Thermus thermophilus Gene Name(s): rplQ rpl17 TTHA1663
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L20 BU 118 Thermus thermophilus
50S ribosomal protein L21 BV 100 Thermus thermophilus
50S ribosomal protein L29 B2 70 Thermus thermophilus
50S ribosomal protein L30 B3 60 Thermus thermophilus Gene Name(s): rpmD TTHA1674
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L27 B0 91 Thermus thermophilus
50S ribosomal protein L31 B4 73 Thermus thermophilus
50S ribosomal protein L32 B5 60 Thermus thermophilus
50S ribosomal protein L33 B6 82 Thermus thermophilus
50S ribosomal protein L34 B7 47 Thermus thermophilus
50S ribosomal protein L35 B8 64 Thermus thermophilus
50S ribosomal protein L36 B9 36 Thermus thermophilus
50S ribosomal protein L11 BK 141 Thermus thermophilus
Macromolecule Entities
Molecule Chains Length Organism Details
16S ribosomal RNA AA 1522 Thermus thermophilus
P-site tRNA (Phe) AV 76 Escherichia coli
E-site tRNA (Phe) AW 76 Escherichia coli
5'-R(*AP*UP*GP*UP*UP*CP*UP*AP*GP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3' AX 18 synthetic mRNA
5S ribosomal RNA BB 123 Thermus thermophilus
23S ribosomal RNA BA 2916 Thermus thermophilus

Small Molecules
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
YYG
Query on YYG
AW RNA LINKING C21 H29 N6 O12 P G
PSU
Query on PSU
AW RNA LINKING C9 H13 N2 O9 P U

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.9 Å
  • R-Value Free: 0.371
  • R-Value Work: 0.351
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 518.99 α = 90.00
b = 518.99 β = 90.00
c = 365.14 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2005-09-30
  • Released Date: 2014-07-09
  • Deposition author(s): Petry, S., Brodersen, D.E., Murphy IV, F.V., Dunham, C.M., Selmer, M., Tarry, M.J., Kelley, A.C., Ramakrishnan, V.
  • This entry supercedes: 2B64 2B66

Revision History

  • Version 1_0: 2014-07-09

    Type: Initial release

  • Version 1_1: 2014-12-10

    Type: Other