4RWA

Synchrotron structure of the human delta opioid receptor in complex with a bifunctional peptide (PSI community target)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.28 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.239

Literature

Macromolecules
Sequence Display for 4RWA

Classification: MEMBRANE PROTEIN

Total Structure Weight: 92951.73

Macromolecule Entities
Molecule Chains Length Organism Details
Soluble cytochrome b562,Delta-type opioid receptor A, B 411 Escherichia coli Homo sapiens Mutation: M1007W, H1102I, R1106L
Gene Name(s): cybC OPRD1 Gene View OPRD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
bifunctional peptide G, H 5 Synthetic construct

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: G Protein-Coupled Receptors (GPCRs)

Protein Name: δ-opioid receptor in complex with naltrindol


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OLC
Query on OLC

A (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol (Synonym)
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_001256
Query on PRD_001256
G, H bifunctional peptide Peptide-like /
Unknown
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.28 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.239
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 160.55 α = 90.00
b = 86.12 β = 92.21
c = 94.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-12-01
  • Released Date: 2015-01-14
  • Deposition author(s): Fenalti, G., Zatsepin, N.A., Betti, C., Giguere, P., Han, G.W., Ishchenko, A., Liu, W., Guillemyn, K., Zhang, H., James, D., Wang, D., Weierstall, U., Spence, J.C.H., Boutet, S., Messerschmidt, M., Williams, G.J., Gati, C., Yefanov, O.M., White, T.A., Oberthuer, D., Metz, M., Yoon, C.H., Barty, A., Chapman, H.N., Basu, S., Coe, J., Conrad, C.E., Fromme, R., Fromme, P., Tourwe, D., Schiller, P.W., Roth, B.L., Ballet, S., Katritch, V., Stevens, R.C., Cherezov, V., GPCR Network (GPCR)

Revision History

  • 2015-04-01
    Type: Database references
  • 2017-06-07
    Type: Database references, Structure summary