4RHP

Crystal structure of human COQ9 in complex with a phospholipid, Northeast Structural Genomics Consortium Target HR5043


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 4RHP

Classification: BIOSYNTHETIC PROTEIN

Total Structure Weight: 54875.45

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquinone biosynthesis protein COQ9, mitochondrial A, B 235 Homo sapiens Fragment: residues 84-318
Gene Name(s): COQ9 Gene View C16orf49 HSPC326 PSEC0129
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEF
Query on PEF

A DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE
3-[AMINOETHYLPHOSPHORYL]-[1,2-DI-PALMITOYL]- SN-GLYCEROL (Synonym)
C37 H74 N O8 P
SLKDGVPOSSLUAI-PGUFJCEWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.179
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 38.34 α = 90.00
b = 97.63 β = 95.77
c = 64.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-10-02
  • Released Date: 2014-10-22
  • Deposition author(s): Forouhar, F., Lew, S., Seetharaman, J., Wang, H., Lee, D., Kogan, S., Maglaqui, M., Xiao, R., Everett, J.K., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG), Mitochondrial Protein Partnership (MPP)

Revision History

  • 2014-10-29
    Type: Database references
  • 2014-11-19
    Type: Database references