4R3I

The crystal structure of an RNA complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 4R3I

Classification: RNA BINDING PROTEIN / RNA

Total Structure Weight: 20423.86


Macromolecule Entities
Molecule Chains Length Organism Details
YTH domain-containing protein 1 A 166 Homo sapiens Gene Name(s): YTHDC1 Gene View KIAA1966 YT521
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*GP*GP*(6MZ)P*CP*U)-3') B 5 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UNX
Query on UNX

A UNKNOWN ATOM OR ION
X
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
6MZ
Query on 6MZ
B RNA LINKING C11 H16 N5 O7 P A

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.203
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 35.73 α = 90.00
b = 39.75 β = 103.56
c = 56.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-08-15
  • Released Date: 2014-09-17
  • Deposition author(s): Tempel, W., Xu, C., Liu, K., Li, Y., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

Revision History

  • 2014-10-01
    Type: Database references
  • 2014-11-19
    Type: Database references