4OZD

Crystal structure of PdSP15a

• PDB DOI: https://doi.org/10.2210/pdb4OZD/pdb

• Classification: PROTEIN BINDING
• Organism(s): Phlebotomus duboscqi
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2014-02-14 Released: 2015-03-04 
• Deposition Author(s): Andersen, J.F., Alvarenga, P.H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.95 Å
• R-Value Free: 0.263 
• R-Value Work: 0.200 
• R-Value Observed: 0.203 

Literature

Protection against cutaneous leishmaniasis in non-human primates by immunization with an insect salivary protein

Oliveira, F., Rowton, E., Gomes, R., Castrovinci, P.A., Lawyer, P.G., Teixeira, C., Aslan, H., Kleeman, L., Meneses, C., Rowland, T., Gilmore, D., Andersen, J., Alvarenga, P.H., Kamhawi, S., Valenzuela, J.G.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 generated by PISA (software)

Biological Assembly 5  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 5 generated by PISA (software)

Biological Assembly 6  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 6 generated by PISA (software)

Biological Assembly 7  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 7 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 101.27 kDa 
• Atom Count: 7,008 
• Modelled Residue Count: 840 
• Deposited Residue Count: 854 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
14.4 kDa salivary protein	A, B, C, D, E, F, G	122	Phlebotomus duboscqi	Mutation(s): 0  Gene Names: M02
UniProt
Find proteins for Q06KA5 (Phlebotomus duboscqi) Explore Q06KA5  Go to UniProtKB:  Q06KA5

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.95 Å
• R-Value Free: 0.263 
• R-Value Work: 0.200 
• R-Value Observed: 0.203 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.558	α = 90
b = 79.73	β = 90
c = 232.294	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	phasing
PHASER	phasing
PDB_EXTRACT	data extraction
PHENIX	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-03-04 
Deposition Author(s): Andersen, J.F., Alvarenga, P.H.

Revision History  

• Version 1.0: 2015-03-04
  Type: Initial release
  
• Version 1.1: 2015-05-20
  Changes: Structure summary
• Version 1.2: 2017-11-22
  Changes: Database references, Derived calculations, Other, Refinement description, Source and taxonomy, Structure summary
• Version 1.3: 2018-03-21
  Changes: Data collection, Source and taxonomy
• Version 1.4: 2023-12-27
  Changes: Data collection, Database references, Refinement description