4MKV

Structure of Pisum sativum Rubisco with ABA

Structural Biology Knowledgebase: 4MKV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.162

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4MKV

Classification: LYASE

Total Structure Weight: 264027.69

Macromolecule Entities
Molecule Chains Length Organism Details
Ribulose bisphosphate carboxylase large chain A, B, C, D 458 Pisum sativum EC#: 4.1.1.39 IUBMB
Fragment: UNP residues 12-469
Gene Name(s): rbcL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribulose bisphosphate carboxylase small chain 3A, chloroplastic S, T, U, V 123 Pisum sativum EC#: 4.1.1.39 IUBMB
Fragment: UNP residues 58-180
Mutation: E47K, V91K, A92K, Q96R, E121A, S122G
Gene Name(s): RBCS-3A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RUB
Query on RUB

A, B, C, D RIBULOSE-1,5-DIPHOSPHATE
C5 H12 O11 P2
YAHZABJORDUQGO-NQXXGFSBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
A8S
Query on A8S

B (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl- 4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4- dienoic acid
6,, (2Z (Synonym)
C15 H20 O4
JLIDBLDQVAYHNE-YKALOCIXSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, C, D PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.162
  • Space Group: P 21 2 21

Unit Cell:

Length (Å) Angle (°)
a = 110.44 α = 90.00
b = 110.23 β = 90.00
c = 203.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-09-05
  • Released Date: 2013-10-16
  • Deposition author(s): Loewen, M.C., Loewen, P.C., Switala, J.

Revision History

No revisions since initial release