4LOV

Crystal structure of FimH in complex with Heptylmannoside


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.161

Literature

Macromolecules
Sequence Display for 4LOV

Classification: CARBOHYDRATE BINDING PROTEIN

Total Structure Weight: 17356.23

Macromolecule Entities
Molecule Chains Length Organism Details
Protein FimH A 158 Escherichia coli Fragment: UNP residues 22-179
Gene Name(s): fimH b4320 JW4283
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
KGM
Query on KGM

A Heptyl Alpha-D-mannopyrannoside
C13 H26 O6
NIDYWHLDTIVRJT-BNDIWNMDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
KGM N/A in BindingDB
Kd: 17.1 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.161
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 39.90 α = 90.00
b = 41.82 β = 90.00
c = 97.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-13
  • Released Date: 2014-02-12
  • Deposition author(s): Garcia-Pino, A., Vanwetswinkel, S., van Nuland, N.

Revision History

  • Version 1_0: 2014-02-12

    Type: Initial release

  • Version 1_1: 2014-03-12

    Type: Database references