4LDE

Structure of beta2 adrenoceptor bound to BI167107 and an engineered nanobody

Structural Biology Knowledgebase: 4LDE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.79 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.227

Literature

Macromolecules
Sequence Display for 4LDE

Classification: MEMBRANE PROTEIN / HYDROLASE

Total Structure Weight: 67114.99

Macromolecule Entities
Molecule Chains Length Organism Details
Lysozyme, Beta-2 adrenergic receptor A 469 Homo sapiens Enterobacteria phage t4 sensu lato EC#: 3.2.1.17 IUBMB
Fragment: UNP residues 29-348 with a deletion of residues 235-263
Mutation: C919T, C962A, M1096T, M1098T, N1187E, C1265A
Gene Name(s): E ADRB2 Gene View ADRB2R B2AR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Camelid Antibody Fragment B 120 Lama glama

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P0G
Query on P0G

A 8-[(1R)-2-{[1,1-dimethyl-2-(2-methylphenyl)ethyl]amino}- 1-hydroxyethyl]-5-hydroxy-2H-1,4-benzoxazin- 3(4H)-one
C21 H26 N2 O4
NWQXBEWHTDRJIP-KRWDZBQOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1WV
Query on 1WV

A (2S)-2,3-dihydroxypropyl (7Z)-tetradec-7- enoate
C17 H32 O4
LVBAGTJIDOCNIJ-INIZCTEOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.79 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.227
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.67 α = 90.00
b = 66.48 β = 90.00
c = 303.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-24
  • Released Date: 2013-09-25
  • Deposition author(s): Ring, A.M., Manglik, A., Kruse, A.C., Enos, M.D., Weis, W.I., Garcia, K.C., Kobilka, B.K.

Revision History

  • 2013-10-30
    Type: Citation | Details: Citation update