4KRO

Nanobody/VHH domain EgA1 in complex with the extracellular region of EGFR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.221

Literature

Macromolecules
Sequence Display for 4KRO

Classification: TRANSFERASE / IMMUNE SYSTEM

Total Structure Weight: 133091.34

Macromolecule Entities
Molecule Chains Length Organism Details
Epidermal growth factor receptor A 624 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: Extracellular region (UNP residues 25-642)
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nanobody/VHH domain EgA1 B 138 Lama glama
Cetuximab light chain C 211 Homo sapiens Mus musculus Fragment: Fab
Cetuximab heavy chain D 220 Homo sapiens Mus musculus Fragment: Fab

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.221
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 66.21 α = 90.00
b = 96.29 β = 100.68
c = 128.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-16
  • Released Date: 2013-08-28
  • Deposition author(s): Ferguson, K.M., Schmitz, K.R.

Revision History

  • Version 1_0: 2013-08-28

    Type: Initial release