4K3J

Crystal structure of Onartuzumab Fab in complex with MET and HGF-beta


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 4K3J

Classification: Transferase / Immune System / Growth Factor

Total Structure Weight: 135381.98

Macromolecule Entities
Molecule Chains Length Organism Details
Hepatocyte growth factor A 233 Homo sapiens Fragment: unp residues 495-721
Mutation: C604S
Gene Name(s): HGF Gene View HPTA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Hepatocyte growth factor beta chain B 534 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: Sema and PSI domain, UNP residues 39-564
Gene Name(s): MET Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Onartuzumab Fab heavy chain H 224 Homo sapiens Mus musculus
Onartuzumab Fab light chain L 220 Homo sapiens Mus musculus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.211
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 128.19 α = 90.00
b = 192.23 β = 90.00
c = 65.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-10
  • Released Date: 2013-08-28
  • Deposition author(s): Ma, X., Starovasnik, M.A.

Revision History

  • 2014-05-21
    Type: Source and taxonomy
  • 2014-08-20
    Type: Source and taxonomy