Procrustean bed of RNA silencing suppression
Katorcha, E., Tamjar, J., Popov, A.N., Malinina, L.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
RNA silencing suppressor p19 | A, B [auth D] | 127 | Tomato bushy stunt virus | Mutation(s): 0  Gene Names: ORF4 | |
UniProt | |||||
Find proteins for P69517 (Tomato bushy stunt virus (strain Ja9)) Explore P69517  Go to UniProtKB:  P69517 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P69517 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
5'-R(P*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*C)-3' | C [auth B], D [auth G] | 20 | N/A | ||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | E [auth A], F [auth A], G [auth D], H [auth D] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
MG Query on MG | I [auth D], J [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 89.917 | α = 90 |
b = 89.917 | β = 90 |
c = 148.353 | γ = 120 |
Software Name | Purpose |
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DENZO | data reduction |
SCALEPACK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
ADSC | data collection |
HKL-2000 | data reduction |
REFMAC | phasing |