4JNL

Crystal Structure of uPA in complex with its inhibitor 4-bromobenzylamine at pH 7.4

Structural Biology Knowledgebase: 4JNL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JNL

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 28126.99

Macromolecule Entities
Molecule Chains Length Organism Details
Urokinase-type plasminogen activator U 247 Homo sapiens EC#: 3.4.21.73 IUBMB
Fragment: catalytic domain
Mutation: C122A, N145Q
Gene Name(s): PLAU Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PZH
Query on PZH

U 1-(4-BROMOPHENYL)METHANAMINE
4-BROMOBENZYLAMINE (Synonym)
C7 H8 Br N
XRNVSPDQTPVECU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

U SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.198
  • Space Group: H 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 121.57 α = 90.00
b = 121.57 β = 90.00
c = 42.21 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-15
  • Released Date: 2014-03-19
  • Deposition author(s): Zhang, X., Jiang, L., Zhao, B., Yuan, C., Huang, M.

Revision History

No revisions since initial release