4JAX

Crystal structure of dimeric KlHxk1 in crystal form X


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.26 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.201 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

In vivo phosphorylation and in vitro autophosphorylation-inactivation of Kluyveromyces lactis hexokinase KlHxk1.

Kettner, K.Kuettner, E.B.Otto, A.Lilie, H.Golbik, R.P.Strater, N.Kriegel, T.M.

(2013) Biochem Biophys Res Commun 435: 313-318

  • DOI: https://doi.org/10.1016/j.bbrc.2013.03.121
  • Primary Citation of Related Structures:  
    4JAX

  • PubMed Abstract: 

    The bifunctional hexokinase KlHxk1 is a key component of glucose-dependent signal transduction in Kluyveromyces lactis. KlHxk1 is phosphorylated in vivo and undergoes ATP-dependent autophosphorylation-inactivation in vitro. This study identifies serine-15 as the site of in vivo phosphorylation and serine-157 as the autophosphorylation-inactivation site. X-ray crystallography of the in vivo phosphorylated enzyme indicates the existence of a ring-shaped symmetrical homodimer carrying two phosphoserine-15 residues. In contrast, small-angle X-ray scattering and equilibrium sedimentation analyses reveal the existence of monomeric phosphoserine-15 KlHxk1 in solution. While phosphorylation at serine-15 and concomitant homodimer dissociation are likely to be involved in glucose signalling, mechanism and putative physiological significance of KlHxk1 inactivation by autophosphorylation at serine-157 remain to be established.


  • Organizational Affiliation

    Institute of Physiological Chemistry, Carl Gustav Carus Medical Faculty, Technische Universität Dresden, Dresden, Germany. karina.kettner@tu-dresden.de


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Hexokinase
A, B, C, D, E
A, B, C, D, E, F
485Kluyveromyces lactis NRRL Y-1140Mutation(s): 0 
Gene Names: KLLA0D11352gRAG5
EC: 2.7.1.1
UniProt
Find proteins for P33284 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Explore P33284 
Go to UniProtKB:  P33284
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP33284
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download Ideal Coordinates CCD File 
AA [auth E]
BA [auth E]
EA [auth F]
G [auth A]
H [auth A]
AA [auth E],
BA [auth E],
EA [auth F],
G [auth A],
H [auth A],
I [auth A],
J [auth A],
M [auth B],
O [auth C],
P [auth C],
Q [auth C],
R [auth C],
U [auth D],
V [auth D],
W [auth D],
X [auth D],
Z [auth E]
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
GOL
Query on GOL

Download Ideal Coordinates CCD File 
CA [auth E]
DA [auth E]
K [auth A]
L [auth A]
N [auth B]
CA [auth E],
DA [auth E],
K [auth A],
L [auth A],
N [auth B],
S [auth C],
T [auth C],
Y [auth D]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
SEP
Query on SEP
A, B, C, D, E
A, B, C, D, E, F
L-PEPTIDE LINKINGC3 H8 N O6 PSER
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.26 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.201 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 105.81α = 90
b = 178.3β = 90
c = 216.21γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345data collection
XDSdata reduction
XSCALEdata scaling
MOLREPphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-05-01
    Type: Initial release
  • Version 1.1: 2013-06-19
    Changes: Database references
  • Version 1.2: 2017-11-15
    Changes: Refinement description
  • Version 1.3: 2023-09-20
    Changes: Data collection, Database references, Derived calculations, Refinement description