4IY2

Structural and ligand binding properties of the Bateman domain of human magnesium transporters CNNM2 and CNNM4

PDB DOI: https://doi.org/10.2210/pdb4IY2/pdb

Classification: METAL TRANSPORT
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-01-28 Released: 2014-03-05
Deposition Author(s): Corral-Rodriguez, M.A., Stuiver, M., Encinar, J.A., Spiwok, V., Gomez-Garcia, I., Oyenarte, I., Ereno-Orbea, J., Terashima, H., Accardi, A., Diercks, T., Muller, D., Martinez-Cruz, L.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.60 Å
R-Value Free: 0.300
R-Value Work: 0.293
R-Value Observed: 0.294

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural and ligand binding properties of the Bateman domain of human magnesium transporters CNNM2 and CNNM4

Corral-Rodriguez, M.A., Stuiver, M., Encinar, J.A., Spiwok, V., Gomez-Garcia, I., Oyenarte, I., Ereno-Orbea, J., Terashima, H., Accardi, A., Diercks, T., Muller, D., Martinez-Cruz, L.A.

To be published.

Macromolecule Content

Total Structure Weight: 36.3 kDa
Atom Count: 2,426
Modelled Residue Count: 304
Deposited Residue Count: 312
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Metal transporter CNNM2	A, B [auth C]	156	Homo sapiens	Mutation(s): 0 Gene Names: CNNM2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H8M5 (Homo sapiens) Explore Q9H8M5 Go to UniProtKB: Q9H8M5
PHAROS: Q9H8M5 GTEx: ENSG00000148842
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9H8M5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B [auth C]	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.60 Å
R-Value Free: 0.300
R-Value Work: 0.293
R-Value Observed: 0.294
Space Group: I 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 102.513	α = 90
b = 104.593	β = 90
c = 105.694	γ = 90

Software Package:

Software Name	Purpose
DNA	data collection
PHENIX	model building
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2014-03-05

Deposition Author(s):

Corral-Rodriguez, M.A.

Gomez-Garcia, I.

Ereno-Orbea, J.

Martinez-Cruz, L.A.

Revision History (Full details and data files)

Version 1.0: 2014-03-05
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.