4GYC

Structure of the SRII(D75N mutant)/HtrII Complex in I212121 space group ("U" shape)

Structural Biology Knowledgebase: 4GYC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.203

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GYC

Classification: MEMBRANE PROTEIN

Total Structure Weight: 42952.31

Macromolecule Entities
Molecule Chains Length Organism Details
Sensory rhodopsin-2 A 245 Natronomonas pharaonis Mutation: D75N
Gene Name(s): sop2 sopII
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Sensory rhodopsin II transducer B 135 Natronomonas pharaonis Gene Name(s): htr2 htrII
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: Bacterial and Algal Rhodopsins

Protein Name: Sensory Rhodopsin II (SRII)


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RET
Query on RET

A RETINAL
C20 H28 O
NCYCYZXNIZJOKI-OVSJKPMPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LFA
Query on LFA

A EICOSANE
LIPID FRAGMENT (Synonym)
C20 H42
CBFCDTFDPHXCNY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.203
  • Space Group: I 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.47 α = 90.00
b = 113.67 β = 90.00
c = 126.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-05
  • Released Date: 2013-05-08
  • Deposition author(s): Ishchenko, A., Round, E., Borshchevskiy, V., Grudinin, S., Gushchin, I, Klare, J., Remeeva, A., Utrobin, P., Balandin, T., Engelhard, M., Bueldt, G., Gordeliy, V.

Revision History

No revisions since initial release