4GXB

Structure of the SNX17 atypical FERM domain bound to the NPxY motif of P-selectin

Structural Biology Knowledgebase: 4GXB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.177

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GXB

Classification: PROTEIN TRANSPORT / CELL ADHESION

Total Structure Weight: 36366.73

Macromolecule Entities
Molecule Chains Length Organism Details
Sorting nexin-17 A 280 Homo sapiens Fragment: FERM domain, UNP residues 111-388
Gene Name(s): SNX17 Gene View KIAA0064
P-selectin B 41 Mus musculus Fragment: intracellular domain, UNP residues 735-768
Gene Name(s): Selp Grmp

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.177
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.75 α = 90.00
b = 93.75 β = 90.00
c = 91.31 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-04
  • Released Date: 2013-03-13
  • Deposition author(s): Ghai, R., Bugarcic, A., Liu, H., Norwood, S.J., Li, S.S., Teasdale, R.D., Collins, B.M.

Revision History

No revisions since initial release