4GB7

Putative 6-aminohexanoate-dimer hydrolase from Bacillus anthracis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.132

Literature

Macromolecules
Sequence Display for 4GB7

Classification: HYDROLASE

Total Structure Weight: 48459.48

Macromolecule Entities
Molecule Chains Length Organism Details
6-aminohexanoate-dimer hydrolase A 422 Bacillus anthracis Gene Name(s): nylB GBAA_3346 AB163_04985 AB164_22100 AB165_17005 AB166_08975 AB167_26865 AB168_14765 AB169_25715 AB170_14920 AB171_17240 AB893_16295 ADT20_10745 ADT21_19875 BASH2_02570 BF27_4309
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NO3
Query on NO3

A NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 60.70 α = 90.00
b = 61.60 β = 90.00
c = 111.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-26
  • Released Date: 2012-08-08
  • Deposition author(s): Osipiuk, J., Zhou, M., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2012-08-08

    Type: Initial release

  • Version 1_1: 2017-11-15

    Type: Refinement description