Download MendeleyOxidation of Cysteine 195 of Huyman Thymidylate Synthase by Purpurogallin
Celeste, L.R., Lovelace, L.L., Lebioda, L.To be published.
4G2O
Human Thymidylate Synthase M190K with bound Purpurogallin
- PDB DOI: https://doi.org/10.2210/pdb4G2O/pdb
- Classification: TRANSFERASE/TRANSFERASE INHIBITOR
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2012-07-12 Released: 2013-07-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.246
- R-Value Work: 0.224
- R-Value Observed: 0.225
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thymidylate synthase | A [auth X] | 313 | Homo sapiens | Mutation(s): 1 Gene Names: OK/SW-cl.29, TS, TYMS EC: 2.1.1.45 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P04818 (Homo sapiens) Explore P04818 Go to UniProtKB: P04818 | |||||
PHAROS: P04818 GTEx: ENSG00000176890 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P04818 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TIY Query on TIY | B [auth X] | 2,3,4,6-tetrahydroxy-5H-benzo[7]annulen-5-one C11 H8 O5 WDGFFVCWBZVLCE-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | C [auth X], D [auth X] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CME Query on CME | A [auth X] | L-PEPTIDE LINKING | C5 H11 N O3 S2 |  | CYS |
| CSD Query on CSD | A [auth X] | L-PEPTIDE LINKING | C3 H7 N O4 S |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.246
- R-Value Work: 0.224
- R-Value Observed: 0.225
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 95.727 | α = 90 |
| b = 95.727 | β = 90 |
| c = 80.414 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data collection |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| HKL-2000 | data scaling |
| PHASES | phasing |
Entry History
Deposition Data
- Released Date: 2013-07-17 Deposition Author(s): Celeste, L.R., Lebioda, L.
Revision History (Full details and data files)
- Version 1.0: 2013-07-17
Type: Initial release - Version 1.1: 2014-11-19
Changes: Structure summary - Version 1.2: 2017-11-15
Changes: Refinement description - Version 1.3: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
