4FKE

Crystal structure of porcine aminopeptidase-N

Structural Biology Knowledgebase: 4FKE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.142

Literature

Macromolecules
Sequence Display for 4FKE

Classification: HYDROLASE

Total Structure Weight: 108574.18

Macromolecule Entities
Molecule Chains Length Organism Details
Aminopeptidase N A 909 Sus scrofa EC#: 3.4.11.2 IUBMB
Fragment: UNP residues 62-963
Mutation: F82N, L107F
Gene Name(s): ANPEP Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.142
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 259.97 α = 90.00
b = 62.77 β = 100.12
c = 81.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-13
  • Released Date: 2012-10-17
  • Deposition author(s): Chen, L., Lin, Y.L., Peng, G., Li, F.

Revision History

  • 2012-11-14
    Type: Citation | Details: Citation update
  • 2012-10-31
    Type: Function and keywords | Details: Updated related entries list
  • 2012-10-31
    Type: Citation | Details: Citation update