4FBZ

Crystal structure of deltarhodopsin from Haloterrigena thermotolerans


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.235

Literature

Macromolecules
Sequence Display for 4FBZ

Classification: MEMBRANE PROTEIN

Total Structure Weight: 29158.25

Macromolecule Entities
Molecule Chains Length Organism Details
deltarhodopsin A 241 Haloterrigena thermotolerans Gene Name(s): dop
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
22B
Query on 22B

A BACTERIORUBERIN
C50 H76 O4
UVCQMCCIAHQDAF-CUMPQFAQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
L2P
Query on L2P

A 2,3-DI-PHYTANYL-GLYCEROL
1,2-DI-1-(3,7,11,15-TETRAMETHYL-HEXADECANE)- SN-GLYCEROL (Synonym)
C43 H88 O3
ISDBCJSGCHUHFI-UMZPFTBHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SQL
Query on SQL

A (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa- 2,6,10,14,18,22-hexaene
squalene (Synonym)
C30 H50
YYGNTYWPHWGJRM-AAJYLUCBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BNG
Query on BNG

A B-NONYLGLUCOSIDE
C15 H30 O6
QFAPUKLCALRPLH-UXXRCYHCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RET
Query on RET

A RETINAL
C20 H28 O
NCYCYZXNIZJOKI-OVSJKPMPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.235
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 111.71 α = 90.00
b = 111.71 β = 90.00
c = 198.25 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-23
  • Released Date: 2013-05-15
  • Deposition author(s): Kouyama, T.

Revision History

  • Version 1_0: 2013-05-15

    Type: Initial release

  • Version 1_1: 2013-10-09

    Type: Database references