4EEK

Crystal structure of HAD FAMILY HYDROLASE DR_1622 from Deinococcus radiodurans R1 (TARGET EFI-501256) With bound phosphate and sodium


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.187

Literature

Macromolecules
Sequence Display for 4EEK

Classification: HYDROLASE

Total Structure Weight: 27656.09

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-phosphoglucomutase-related protein A 259 Deinococcus radiodurans Gene Name(s): DR_1622
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.187
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 55.54 α = 90.00
b = 55.54 β = 90.00
c = 273.09 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-28
  • Released Date: 2012-04-18
  • Deposition author(s): Patskovsky, Y., Toro, R., Bhosle, R., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Allen, K.N., Dunaway-Mariano, D., Almo, S.C., (Efi), Enzyme Function Initiative

Revision History

  • Version 1_0: 2012-04-18

    Type: Initial release