4DHZ

The structure of h/ceOTUB1-ubiquitin aldehyde-UBC13~Ub

Structural Biology Knowledgebase: 4DHZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.11 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.233

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DHZ

Classification: HYDROLASE / SIGNALING PROTEIN / LIGASE

Total Structure Weight: 67137.75

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin thioesterase otubain-like A 288 Caenorhabditis elegans Homo sapiens EC#: 3.4.19.12 IUBMB
Fragment: SEE REMARK 999
Gene Name(s): OTUB1 Gene View OTB1 OTU1 HSPC263 otub-1 C25D7.8
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin aldehyde B 76 Homo sapiens Gene Name(s): UBC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin E 76 Homo sapiens Mutation: G576C
Gene Name(s): UBC Gene View
Ubiquitin-conjugating enzyme E2 N F 152 Homo sapiens EC#: 2.3.2.23 IUBMB
Gene Name(s): UBE2N Gene View BLU
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
GLZ
Query on GLZ
B L-PEPTIDE LINKING C2 H5 N O GLY

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.11 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.233
  • Space Group: P 41
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 123.37 α = 90.00
b = 123.37 β = 90.00
c = 68.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-30
  • Released Date: 2012-02-22
  • Deposition author(s): Wiener, R., Zhang, X., Wang, T., Wolberger, C.

Revision History

  • 2012-04-04
    Type: Citation | Details: Citation update
  • 2012-03-14
    Type: Citation | Details: Citation update
  • 2012-02-29
    Type: Citation | Details: Citation update