4DGD

TRIMCyp cyclophilin domain from Macaca mulatta: H70C mutant

Structural Biology Knowledgebase: 4DGD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.168
  • R-Value Work: 0.136

Literature

Macromolecules
Sequence Display for 4DGD

Classification: ISOMERASE

Total Structure Weight: 18073.69

Macromolecule Entities
Molecule Chains Length Organism Details
TRIMCyp A 165 Macaca mulatta EC#: 5.2.1.8 IUBMB
Fragment: cyclophilin domain (UNP residues 304-468)
Mutation: H70C
Gene Name(s): PPIA Gene View CYPA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.168
  • R-Value Work: 0.136
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 36.32 α = 90.00
b = 55.95 β = 90.00
c = 70.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-25
  • Released Date: 2012-02-08
  • Deposition author(s): Caines, M.E.C., Bichel, K., Price, A.J., McEwan, W.A., James, L.C.

Revision History

  • 2012-04-18
    Type: Citation | Details: Citation update
  • 2012-03-28
    Type: Citation | Details: Citation update