4DDJ

Crystal structure of saposin A in complex with lauryldimethylamine-N-oxide (LDAO)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 4DDJ

Classification: LIPID BINDING PROTEIN

Total Structure Weight: 13649.54

Macromolecule Entities
Molecule Chains Length Organism Details
Saposin-A A 83 Homo sapiens Fragment: UNP residues 60-140
Gene Name(s): PSAP Gene View GLBA SAP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LDA
Query on LDA

A LAURYL DIMETHYLAMINE-N-OXIDE
C14 H31 N O
SYELZBGXAIXKHU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.230
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 39.79 α = 90.00
b = 39.79 β = 90.00
c = 247.28 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-18
  • Released Date: 2012-02-15
  • Deposition author(s): Popovic, K., Prive, G.G.

Revision History

  • Version 1_0: 2012-02-15

    Type: Initial release

  • Version 1_1: 2012-02-22

    Type: Database references

  • Version 1_2: 2012-03-14

    Type: Database references