4D5D

Crystal structure of CymA from Klebsiella oxytoca


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 4D5D

Classification: STRUCTURAL PROTEIN

Total Structure Weight: 90155.68

Macromolecule Entities
Molecule Chains Length Organism Details
CYMA A, B 339 Klebsiella oxytoca Details: CLONING REGION INCLUDING HEPTAHISTIDINE TAG AT N-TERMINUS
Gene Name(s): cymA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: BETA-BARREL

Subgroup Name: Beta-Barrel Membrane Proteins: Porins and Relatives

Protein Name: CymA monomeric outer membrane protein (NHis-SeMet)


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BCD
Query on BCD

A, B BETA-CYCLODEXTRIN
CYCLO-HEPTA-AMYLOSE (Synonym)
C42 H70 O35
WHGYBXFWUBPSRW-FOUAGVGXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACX
Query on ACX

A, B ALPHA-CYCLODEXTRIN (CYCLOHEXA-AMYLOSE)
C36 H60 O30
HFHDHCJBZVLPGP-RWMJIURBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
C8E
Query on C8E

A, B (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
C16 H34 O5
FEOZZFHAVXYAMB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.179
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 140.16 α = 90.00
b = 77.99 β = 90.00
c = 109.93 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-11-03
  • Released Date: 2015-06-03
  • Deposition author(s): vandenBerg, B., Bhamidimarri, S.P., Kleinekathoefer, U., Winterhalter, M.

Revision History

  • 2015-06-10
    Type: Source and taxonomy
  • 2015-06-24
    Type: Database references