4BC3

Crystal structure of human D-xylulokinase

Structural Biology Knowledgebase: 4BC3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.159

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BC3

Classification: TRANSFERASE

Total Structure Weight: 178149.69

Macromolecule Entities
Molecule Chains Length Organism Details
XYLULOSE KINASE A, B, C 538 Homo sapiens EC#: 2.7.1.17 IUBMB
Gene Name(s): XYLB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B, C 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.159
  • Space Group: P 32
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 99.79 α = 90.00
b = 99.79 β = 90.00
c = 157.54 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-01
  • Released Date: 2012-11-28
  • Deposition author(s): Bunker, R.D., Loomes, K.M., Baker, E.N.

Revision History

  • 2013-02-13
    Type: Citation | Details: JRNL
  • 2013-01-30
    Type: Citation | Details: JRNL
  • 2012-12-05
    Type: Citation | Details: JRNL