4BB9

Crystal structure of glucokinase regulatory protein complexed to fructose-1-phosphate

Structural Biology Knowledgebase: 4BB9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.160

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BB9

Classification: PROTEIN-BINDING PROTEIN

Total Structure Weight: 70076.01

Macromolecule Entities
Molecule Chains Length Organism Details
GLUCOKINASE REGULATORY PROTEIN A 633 Homo sapiens Mutation: K326T, K327T
Gene Name(s): GCKR Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
F1P
Query on F1P

A 1-O-PHOSPHONO-BETA-D-FRUCTOPYRANOSE
3,, ((2R,3S (Synonym)
C6 H13 O9 P
HXRNACQBNUPKDX-ARQDHWQXSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
F1P N/A in BindingDB
N/A in BindingMoad
Kd: 1000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.160
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.97 α = 90.00
b = 72.30 β = 90.00
c = 136.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-21
  • Released Date: 2013-05-15
  • Deposition author(s): Pautsch, A., Stadler, N., Loehle, A., Lenter, M., Rist, W., Berg, A., Glocker, L., Nar, H., Reinert, D., Heckel, A., Schnapp, G., Kauschke, S.G.

Revision History

  • 2013-08-28
    Type: Citation | Details: JRNL