4AQL

HUMAN GUANINE DEAMINASE IN COMPLEX WITH VALACYCLOVIR

Structural Biology Knowledgebase: 4AQL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4AQL

Classification: HYDROLASE

Total Structure Weight: 54010.88

Macromolecule Entities
Molecule Chains Length Organism Details
GUANINE DEAMINASE A 476 Homo sapiens EC#: 3.5.4.3 IUBMB
Gene Name(s): GDA Gene View KIAA1258
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TXC
Query on TXC

A 2-[(2-amino-6-oxo-1,6-dihydro-9H-purin-9- yl)methoxy]ethyl L-valinate
Valacyclovir (Synonym)
C13 H20 N6 O4
HDOVUKNUBWVHOX-QMMMGPOBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.181
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.73 α = 90.00
b = 91.38 β = 90.00
c = 131.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-04-18
  • Released Date: 2012-05-02
  • Deposition author(s): Welin, M., Egeblad, L., Arrowsmith, C.H., Berglund, H., Bountra, C., Collins, R., Edwards, A.M., Flodin, S., Graslund, S., Hammarstrom, M., Johansson, I., Karlberg, T., Kotenyova, T., Moche, M., Nyman, T., Persson, C., Schuler, H., Thorsell, A.G., Tresaugues, L., Weigelt, J., Nordlund, P.

Revision History

  • 2012-07-25
    Type: Citation | Details: JRNL