4ZJB

Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(FabZ) in complex with holo-ACP from Helicobacter pylori

Structural Biology Knowledgebase: 4ZJB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 4ZJB

Classification: LYASE / BIOSYNTHETIC PROTEIN

Total Structure Weight: 49137.31

Macromolecule Entities
Molecule Chains Length Organism Details
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ A, B 171 Helicobacter pylori EC#: 4.2.1.59 IUBMB
Gene Name(s): fabZ
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Acyl carrier protein G 86 Helicobacter pylori Gene Name(s): acpP AA971_03770 AC783_02170 AC784_02620 AC786_00270 ACM22_01945 ACM24_03385 ACM26_04180 ACM29_06640 ACM31_06735 ACM32_06930 ACM37_01955 AEY53_01410 AEY54_07605 AEY55_04590 AK968_06385 AM496_03540 AM497_00990 AOD77_03695 AP069_04135 APV63_03895 AV920_06785 AV921_04710 EE66_03620 EG63_02640 HPY173_03440 HPY1786_00110 HPY1846_06495 HPY207_02635 HPY228_03880 HPY499_02145 JM68_05695 OA23_03965
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PNS
Query on PNS

G 4'-PHOSPHOPANTETHEINE
C11 H23 N2 O7 P S
JDMUPRLRUUMCTL-VIFPVBQESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CIT
Query on CIT

B CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.190
  • Space Group: P 2 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 127.71 α = 90.00
b = 127.71 β = 90.00
c = 127.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-04-29
  • Released Date: 2016-11-02
  • Deposition author(s): Zhang, L., Zhang, L., Shen, X., Jiang, H.

Revision History

No revisions since initial release