4YXB

FliM(SPOA)::FliN fusion protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.222 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A common assembly module in injectisome and flagellar type III secretion sorting platforms.

Notti, R.Q.Bhattacharya, S.Lilic, M.Stebbins, C.E.

(2015) Nat Commun 6: 7125-7125

  • DOI: https://doi.org/10.1038/ncomms8125
  • Primary Citation of Related Structures:  
    4YX1, 4YX5, 4YX7, 4YXA, 4YXB, 4YXC

  • PubMed Abstract: 

    Translocating proteins across the double membrane of Gram-negative bacteria, type III secretion systems (T3SS) occur in two evolutionarily related forms: injectisomes, delivering virulence factors into host cells, and the flagellar system, secreting the polymeric filament used for motility. While both systems share related elements of a cytoplasmic sorting platform that facilitates the hierarchical secretion of protein substrates, its assembly and regulation remain unclear. Here we describe a module mediating the assembly of the sorting platform in both secretion systems, and elucidate the structural basis for segregation of homologous components among these divergent T3SS subtypes sharing a common cytoplasmic milieu. These results provide a foundation for the subtype-specific assembly of T3SS sorting platforms and will support further mechanistic analysis and anti-virulence drug design.


  • Organizational Affiliation

    1] Laboratory of Structural Microbiology, Rockefeller University, 1230 York Avenue, New York, New York 10065, USA [2] Tri-Institutional Medical Scientist Training Program, Weill Cornell Medical College, 1300 York Avenue, New York, New York 10021, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar motor switch protein FliM,Flagellar motor switch protein FliN
A, B
227Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
Gene Names: fliMcheC2fla AIIfla QIISTM1976fliNflaNmotDSTM1977
UniProt
Find proteins for P26419 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore P26419 
Go to UniProtKB:  P26419
Find proteins for P26418 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore P26418 
Go to UniProtKB:  P26418
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP26418P26419
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
FliM::FliN fragment6Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
UniProt
Find proteins for P26419 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore P26419 
Go to UniProtKB:  P26419
Entity Groups  
UniProt GroupP26419
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
FliM::FliN fragment80Salmonella enterica subsp. enterica serovar Typhimurium str. 798Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
This entity is chimeric
Mutation(s): 0 
Gene Names: fliNUMN798_2086flaNmotDSTM1977
UniProt
Find proteins for P26419 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore P26419 
Go to UniProtKB:  P26419
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP26419
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Ambiguous peptide density6Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
IMD
Query on IMD

Download Ideal Coordinates CCD File 
F [auth A]IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.222 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 75.15α = 90
b = 81.5β = 90
c = 89.96γ = 90
Software Package:
Software NamePurpose
Aimlessdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-06-03
    Type: Initial release
  • Version 1.1: 2017-11-22
    Changes: Derived calculations, Refinement description, Source and taxonomy